SubtiBank SubtiBank
yncC [2019-06-19 11:54:13]
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yncC [2019-06-19 11:54:13]

similar to sugar transport protein
locus
BSU17630
pI
10.20
mw
45.58 kDa
protein length
471 aa Sequence Blast
gene length
1416 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,896,424 1,897,839

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)

    • Paralogous protein(s)

  • [protein|0757FAEB38AA1C599C5067794AF83A4BA5912DC9|CsbC], [protein|4A77316AA94F9C11DB70AB76711AACBD28098AA1|IolT], [protein|770D9A5BEEEABE9C3FC772E74001329206ECFAB3|AraE], [protein|7CE5A42042E5D52768735E795DB805530691D8A6|YwtG], [protein|8B0701B5694ABA8142476CB896E590FE1981D7DB|YfiG]

    • Structure

  • [PDB|4LDS] (from Staphylococcus epidermidis, 36% identity) [pubmed|24127585]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|A84AC4E40E7C722E27AE9C24ACECFEABD51B57BE|yncC]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B095 (yncC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1094 NBRP B. subtilis, Japan]
  • BKE17630 ([gene|A84AC4E40E7C722E27AE9C24ACECFEABD51B57BE|yncC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCCCCTGCCTTTAAGA, downstream forward: _UP4_TAAATATGTTGAAAATCTCT
  • BKK17630 ([gene|A84AC4E40E7C722E27AE9C24ACECFEABD51B57BE|yncC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCCCCTGCCTTTAAGA, downstream forward: _UP4_TAAATATGTTGAAAATCTCT

    • References

    Research papers

  • 24127585